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<?php echo "Development of a text mining tool which will search in all the open access articles of Pubmed and return snippets for every keyword.\r\nThe keywords are listed below\r\nThe software must check on the free articles of Pubmed (which can be found in this URL : http://www.ncbi.nlm.nih.gov/pmc/tools/ftp/ in XML format) and extract for every article that contain the word CKD (Chronic Kidney Disease) and at least one of the keywords, the snippets that are related to every keyword.\r\nEvery list of keywords and snippets must be linked to one PMID (Pubmed ID)\r\nThe snippets must be included in a database in which the excell cells will be linked to.\r\n\r\nPMID\r\nLiteratureTargetSequence\r\nSOURCEdb\r\npub-ID\r\nAssociated disease\r\nBiomarker\r\nGeneSymbol\r\nProtein/Gene/Metabolite Name\r\nspecies\r\ndisease\r\ntype of controls\r\ndisease induction\r\ntissue\r\nsubcell\r\nN (pool; number of pooled individuals from same disease state)\r\n#gel slices\r\nquant method\r\n# of Identified Peptides\r\n# of Unique Peptides\r\nIdentMeth\r\nIdentScore\r\nSequence Coverage (%)\r\nemPAI\r\nTSC\r\nm/z\r\nNSAF\r\nPHR\r\nQUESTIONABLE/CONTAMINANT\r\nID quality\r\nZ score\r\nConfidence %\r\npvtest\r\npvalue\r\nSpot N°\r\nSubcellular Location\r\nProtMod\r\nRegulation in disease\r\nRatio (disease/control) +/- SEM\r\nfrequency found in disease %\r\nfrequency found in healthy %\r\nSensitivity\r\nSpecificity\r\nValidation method\r\nValidation case disease\r\nValidation control disease\r\nValidation case N\r\nValidation control N\r\nValidation diagnostic accuracy\r\nValidation prognostic association\r\n"; ?>
Output for git.master, git.master_jit, rfc.property-hooks
Development of a text mining tool which will search in all the open access articles of Pubmed and return snippets for every keyword. The keywords are listed below The software must check on the free articles of Pubmed (which can be found in this URL : http://www.ncbi.nlm.nih.gov/pmc/tools/ftp/ in XML format) and extract for every article that contain the word CKD (Chronic Kidney Disease) and at least one of the keywords, the snippets that are related to every keyword. Every list of keywords and snippets must be linked to one PMID (Pubmed ID) The snippets must be included in a database in which the excell cells will be linked to. PMID LiteratureTargetSequence SOURCEdb pub-ID Associated disease Biomarker GeneSymbol Protein/Gene/Metabolite Name species disease type of controls disease induction tissue subcell N (pool; number of pooled individuals from same disease state) #gel slices quant method # of Identified Peptides # of Unique Peptides IdentMeth IdentScore Sequence Coverage (%) emPAI TSC m/z NSAF PHR QUESTIONABLE/CONTAMINANT ID quality Z score Confidence % pvtest pvalue Spot N° Subcellular Location ProtMod Regulation in disease Ratio (disease/control) +/- SEM frequency found in disease % frequency found in healthy % Sensitivity Specificity Validation method Validation case disease Validation control disease Validation case N Validation control N Validation diagnostic accuracy Validation prognostic association

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