Development of a text mining tool which will search in all the open access articles of Pubmed and return snippets for every keyword.
The keywords are listed below
The software must check on the free articles of Pubmed (which can be found in this URL : http://www.ncbi.nlm.nih.gov/pmc/tools/ftp/ in XML format) and extract for every article that contain the word CKD (Chronic Kidney Disease) and at least one of the keywords, the snippets that are related to every keyword.
Every list of keywords and snippets must be linked to one PMID (Pubmed ID)
The snippets must be included in a database in which the excell cells will be linked to.
type of controls
N (pool; number of pooled individuals from same disease state)
# of Identified Peptides
# of Unique Peptides
Sequence Coverage (%)
Regulation in disease
Ratio (disease/control) +/- SEM
frequency found in disease %
frequency found in healthy %
Validation case disease
Validation control disease
Validation case N
Validation control N
Validation diagnostic accuracy
Validation prognostic association